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LLPH-DT LLPH divergent transcript [ Homo sapiens (human) ]

Gene ID: 103625681, updated on 10-Oct-2023

Summary

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Official Symbol
LLPH-DTprovided by HGNC
Official Full Name
LLPH divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:50493
See related
Ensembl:ENSG00000239335 AllianceGenome:HGNC:50493
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LLPH-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
12q14.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (66130751..66134449)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (66110257..66113955)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (66524531..66528229)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6610 Neighboring gene RNA, 5S ribosomal pseudogene 362 Neighboring gene NANOG hESC enhancer GRCh37_chr12:66501070-66501571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6612 Neighboring gene LLP homolog, long-term synaptic facilitation factor Neighboring gene transmembrane BAX inhibitor motif containing 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6613 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:66563510-66564034 Neighboring gene MPRA-validated peak1773 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr12:66568604-66568806 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4635 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4636 Neighboring gene interleukin 1 receptor associated kinase 3 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:66616545-66617046 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:66617047-66617546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6615 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4637 Neighboring gene RNA binding motif single stranded interacting protein 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • LLPH antisense RNA 1 (head to head)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125724.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA010836, DA477153
    Related
    ENST00000510317.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    66130751..66134449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    66110257..66113955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases