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LOC103617361 toll-like receptor 2 type-1 [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103617361, updated on 3-Aug-2024

Summary

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Gene symbol
LOC103617361
Gene description
toll-like receptor 2 type-1
Locus tag
N302_04312
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
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Genomic context

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See LOC103617361 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008238448.1 (6967936..6987911)

NW_008238448.1Genomic Context describing neighboring genes Neighboring gene meiotic nuclear divisions 1 Neighboring gene transmembrane 131 like Neighboring gene toll-like receptor 2 type-2 Neighboring gene secreted frizzled related protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008238448.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008238448.1 Reference ASM69197v1

    Range
    6967936..6987911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017736868.1 → XP_017592357.1  toll-like receptor 2 type-1

    UniProtKB/TrEMBL
    A0A091ES32
    Conserved Domains (7) summary
    smart00255
    Location:649 → 787
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:52 → 163
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:88 → 129
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_017736869.1 → XP_017592358.1  toll-like receptor 2 type-1

    UniProtKB/TrEMBL
    A0A091ES32
    Conserved Domains (7) summary
    smart00255
    Location:649 → 787
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:52 → 163
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:88 → 129
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  3. XM_008635647.2 → XP_008633869.1  toll-like receptor 2 type-1

    See identical proteins and their annotated locations for XP_008633869.1

    UniProtKB/TrEMBL
    A0A091ES32
    Conserved Domains (7) summary
    smart00255
    Location:649 → 787
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:52 → 163
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:88 → 129
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  4. XM_017736867.1 → XP_017592356.1  toll-like receptor 2 type-1

    UniProtKB/TrEMBL
    A0A091ES32
    Conserved Domains (7) summary
    smart00255
    Location:649 → 787
    TIR; Toll - interleukin 1 - resistance
    cd00116
    Location:52 → 163
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:65 → 88
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:186 → 206
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:88 → 129
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:88 → 145
    LRR_8; Leucine rich repeat
    cl15307
    Location:542 → 595
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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