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SGCD sarcoglycan delta [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103611428, updated on 3-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Locus tag
N302_05278
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008236924.1 (2610420..2869819)

NW_008236924.1Genomic Context describing neighboring genes Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene uncharacterized LOC108445163 Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4 Neighboring gene uncharacterized LOC108445164 Neighboring gene hepatitis A virus cellular receptor 1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008236924.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008236924.1 Reference ASM69197v1

    Range
    2610420..2869819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017728137.1 → XP_017583626.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A091EEE4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_017728139.1 → XP_017583628.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:20 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_017728138.1 → XP_017583627.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A091EEE4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_017728140.1 → XP_017583629.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:20 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_008628949.2 → XP_008627171.1  delta-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_008627171.1

    UniProtKB/TrEMBL
    A0A091EEE4
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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