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LOC103503817 pectinesterase-like [ Cucumis melo (muskmelon) ]

Gene ID: 103503817, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103503817
Gene description
pectinesterase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103503817 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 9 NC_066865.1 (18485925..18488018, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546272.1 (1877959..1880051, complement)

Chromosome 9 - NC_066865.1Genomic Context describing neighboring genes Neighboring gene proline--tRNA ligase, cytoplasmic Neighboring gene ATP synthase small subunit 6, mitochondrial-like Neighboring gene uncharacterized LOC103503791 Neighboring gene pectinesterase-like Neighboring gene pectinesterase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066865.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    18485925..18488018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008468181.2 → XP_008466403.1  pectinesterase-like

    UniProtKB/TrEMBL
    A0A1S3CSH2, A0A5A7U4V7
    Conserved Domains (3) summary
    PLN02745
    Location:4 → 565
    PLN02745; Putative pectinesterase/pectinesterase inhibitor
    cd15798
    Location:48 → 202
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    cl01911
    Location:255 → 550
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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