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LOC103503575 probable xyloglucan endotransglucosylase/hydrolase protein 30 [ Cucumis melo (muskmelon) ]

Gene ID: 103503575, updated on 23-Nov-2023

Summary

Gene symbol
LOC103503575
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 30
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

See LOC103503575 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 4 NC_066860.1 (1294402..1299016, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007547663.1 (1247197..1251831, complement)

Chromosome 4 - NC_066860.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g32220, chloroplastic Neighboring gene glycerol-3-phosphate acyltransferase, chloroplastic Neighboring gene UV-B-induced protein At3g17800, chloroplastic Neighboring gene bZIP transcription factor 16

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066860.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    1294402..1299016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008467796.3XP_008466018.1  probable xyloglucan endotransglucosylase/hydrolase protein 30

    UniProtKB/TrEMBL
    A0A1S3CQK4
    Conserved Domains (2) summary
    PLN03161
    Location:11305
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:38305
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16