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LOC103503343 polygalacturonase-like [ Cucumis melo (muskmelon) ]

Gene ID: 103503343, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103503343
Gene description
polygalacturonase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103503343 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 9 NC_066865.1 (8856855..8859682, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007547662.1 (1877262..1879841, complement)

Chromosome 9 - NC_066865.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 5-like Neighboring gene serine/threonine-protein kinase STN7, chloroplastic Neighboring gene uncharacterized LOC103503344 Neighboring gene phosphate transporter PHO1 homolog 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066865.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    8856855..8859682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008467507.2 → XP_008465729.1  polygalacturonase-like

    UniProtKB/TrEMBL
    A0A1S3CPW9, A0A5A7T5V3
    Conserved Domains (1) summary
    cl19188
    Location:7 → 391
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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