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LOC103501210 probable xyloglucan endotransglucosylase/hydrolase protein 32 [ Cucumis melo (muskmelon) ]

Gene ID: 103501210, updated on 3-Dec-2024

Summary

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Gene symbol
LOC103501210
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 32
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103501210 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 12 NC_066868.1 (6863156..6865116)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546271.1 (6657930..6659917, complement)

Chromosome 12 - NC_066868.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127144252 Neighboring gene uncharacterized LOC127144254 Neighboring gene uncharacterized LOC127144286 Neighboring gene microRNA MIR172c Neighboring gene uncharacterized LOC103502497

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 32

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066868.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    6863156..6865116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008464728.3 → XP_008462950.2  probable xyloglucan endotransglucosylase/hydrolase protein 32

    UniProtKB/TrEMBL
    A0A1S3CI29, A0A5D3DCZ5
Nucleotide Protein
Heading Accession and Version

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