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LOC103501039 probable xyloglucan endotransglucosylase/hydrolase protein 26 [ Cucumis melo (muskmelon) ]

Gene ID: 103501039, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103501039
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 26
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103501039 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 2 NC_066858.1 (19478207..19479951)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546336.1 (1469035..1470763)

Chromosome 2 - NC_066858.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103501037 Neighboring gene uncharacterized LOC127145838 Neighboring gene uncharacterized LOC127145864 Neighboring gene probable RNA methyltransferase At5g51130 Neighboring gene probable lactoylglutathione lyase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066858.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    19478207..19479951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008464532.3 → XP_008462754.1  probable xyloglucan endotransglucosylase/hydrolase protein 26

    UniProtKB/TrEMBL
    A0A1S3CI70, A0A5A7V5U0, A0A5D3BG08
    Conserved Domains (1) summary
    PLN03161
    Location:1 → 293
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Nucleotide Protein
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