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LOC103499786 probable polygalacturonase At1g80170 [ Cucumis melo (muskmelon) ]

Gene ID: 103499786, updated on 10-Oct-2024

Summary

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Gene symbol
LOC103499786
Gene description
probable polygalacturonase At1g80170
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103499786 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 1 NC_066857.1 (35423320..35427107, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546327.1 (297256..300976)

Chromosome 1 - NC_066857.1Genomic Context describing neighboring genes Neighboring gene BEL1-like homeodomain protein 7 Neighboring gene glyoxylase I 4 Neighboring gene MAPK kinase substrate protein At1g80180-like Neighboring gene uncharacterized LOC103499784

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polygalacturonase At1g80170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066857.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    35423320..35427107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051088895.1 → XP_050944852.1  probable polygalacturonase At1g80170 isoform X2

  2. XM_008462873.3 → XP_008461095.1  probable polygalacturonase At1g80170 isoform X1

    UniProtKB/TrEMBL
    A0A1S3CF54, A0A5D3CGS1
    Conserved Domains (2) summary
    PLN02218
    Location:29 → 418
    PLN02218; polygalacturonase ADPG
    cl19188
    Location:1 → 442
    PL-6; Polysaccharide Lyase Family 6

  3. XM_051088896.1 → XP_050944853.1  probable polygalacturonase At1g80170 isoform X3

RNA

  1. XR_007823148.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases