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LOC103497466 4-alpha-glucanotransferase, chloroplastic/amyloplastic [ Cucumis melo (muskmelon) ]

Gene ID: 103497466, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103497466
Gene description
4-alpha-glucanotransferase, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103497466 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 11 NC_066867.1 (1219477..1227292)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546312.1 (2709596..2717392, complement)

Chromosome 11 - NC_066867.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103497467 Neighboring gene protein MIZU-KUSSEI 1-like Neighboring gene uncharacterized LOC103497464 Neighboring gene pentatricopeptide repeat-containing protein At4g39530 Neighboring gene transfer RNA leucine (anticodon AAG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-alpha-glucanotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
4-alpha-glucanotransferase, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066867.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    1219477..1227292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051079351.1 → XP_050935308.1  4-alpha-glucanotransferase, chloroplastic/amyloplastic isoform X1

  2. XM_008459668.3 → XP_008457890.2  4-alpha-glucanotransferase, chloroplastic/amyloplastic isoform X2

Nucleotide Protein
Heading Accession and Version

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