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LOC103496490 glucomannan 4-beta-mannosyltransferase 9-like [ Cucumis melo (muskmelon) ]

Gene ID: 103496490, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103496490
Gene description
glucomannan 4-beta-mannosyltransferase 9-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103496490 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 3 NC_066859.1 (22573192..22577979, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546307.1 (1183275..1188074)

Chromosome 3 - NC_066859.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 77A3-like Neighboring gene uncharacterized RNA-binding protein C1827.05c Neighboring gene uncharacterized LOC103496654 Neighboring gene pre-mRNA-processing ATP-dependent RNA helicase prp5 Neighboring gene uncharacterized LOC103496488

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucomannan 4-beta-mannosyltransferase 9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066859.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    22573192..22577979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008458356.3 → XP_008456578.1  glucomannan 4-beta-mannosyltransferase 9-like

    UniProtKB/TrEMBL
    A0A1S3C492, A0A5D3CKP9
    Conserved Domains (2) summary
    cd06437
    Location:82 → 318
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex
    pfam13641
    Location:82 → 317
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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