U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103496323 probable galacturonosyltransferase 15 [ Cucumis melo (muskmelon) ]

Gene ID: 103496323, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103496323
Gene description
probable galacturonosyltransferase 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103496323 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 11 NC_066867.1 (23857511..23862817, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546306.1 (2030784..2036110)

Chromosome 11 - NC_066867.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein MADS1 Neighboring gene uncharacterized LOC103496324 Neighboring gene uncharacterized LOC103496322 Neighboring gene protodermal factor 1-like Neighboring gene peroxisomal and mitochondrial division factor 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable galacturonosyltransferase 15

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066867.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    23857511..23862817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008458143.3 → XP_008456365.1  probable galacturonosyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A1S3C352
    Conserved Domains (2) summary
    PLN02867
    Location:1 → 536
    PLN02867; Probable galacturonosyltransferase
    cl11394
    Location:213 → 524
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_051079631.1 → XP_050935588.1  probable galacturonosyltransferase 15 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases