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LOC103496163 probable receptor-like protein kinase At1g49730 [ Cucumis melo (muskmelon) ]

Gene ID: 103496163, updated on 10-Oct-2024

Summary

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Gene symbol
LOC103496163
Gene description
probable receptor-like protein kinase At1g49730
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103496163 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (11528679..11536001, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546305.1 (2412726..2417678, complement)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 2 Neighboring gene uncharacterized LOC127149929 Neighboring gene glycoprotein 3-alpha-L-fucosyltransferase A-like Neighboring gene uncharacterized LOC107992276 Neighboring gene uncharacterized LOC103496165

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable receptor-like protein kinase At1g49730

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    11528679..11536001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008457912.3 → XP_008456134.1  probable receptor-like protein kinase At1g49730 isoform X1

    UniProtKB/TrEMBL
    A0A1S3C241, A0A9I9DJN9
    Conserved Domains (2) summary
    cd14066
    Location:333 → 604
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam00069
    Location:332 → 602
    Pkinase; Protein kinase domain

  2. XM_051086325.1 → XP_050942282.1  probable receptor-like protein kinase At1g49730 isoform X1

    UniProtKB/TrEMBL
    A0A1S3C241

  3. XM_051086327.1 → XP_050942284.1  probable receptor-like protein kinase At1g49730 isoform X3

  4. XM_008457913.3 → XP_008456135.1  probable receptor-like protein kinase At1g49730 isoform X2

    UniProtKB/TrEMBL
    A0A1S3C2M3, A0A5A7T4Q9, A0A9I9DJN9
    Conserved Domains (1) summary
    cd14066
    Location:333 → 595
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
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