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LOC103495962 probable beta-1,3-galactosyltransferase 2 [ Cucumis melo (muskmelon) ]

Gene ID: 103495962, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103495962
Gene description
probable beta-1,3-galactosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103495962 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 11 NC_066867.1 (10608742..10613396)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546304.1 (1645018..1649622)

Chromosome 11 - NC_066867.1Genomic Context describing neighboring genes Neighboring gene probable sodium/metabolite cotransporter BASS4, chloroplastic Neighboring gene uncharacterized LOC103495960 Neighboring gene NEDD8-activating enzyme E1 regulatory subunit AXR1 Neighboring gene microRNA MIR171d Neighboring gene autophagy-related protein 8C-like Neighboring gene uncharacterized LOC103495963

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066867.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    10608742..10613396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051091655.1 → XP_050947612.1  probable beta-1,3-galactosyltransferase 2 isoform X1

  2. XM_051091656.1 → XP_050947613.1  probable beta-1,3-galactosyltransferase 2 isoform X2

  3. XM_051091657.1 → XP_050947614.1  probable beta-1,3-galactosyltransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

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