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LOC103495571 beta-amylase-like [ Cucumis melo (muskmelon) ]

Gene ID: 103495571, updated on 6-Jun-2024

Summary

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Gene symbol
LOC103495571
Gene description
beta-amylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103495571 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 1 NC_066857.1 (2929029..2932215, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546301.1 (2862197..2866048, complement)

Chromosome 1 - NC_066857.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene pentatricopeptide repeat-containing protein At3g63370, chloroplastic-like Neighboring gene proline-rich receptor-like protein kinase PERK10 Neighboring gene cysteine-rich repeat secretory protein 38-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066857.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    2929029..2932215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008457175.3 → XP_008455397.1  beta-amylase-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3C222, A0A5A7TFD9
    Conserved Domains (1) summary
    cl07893
    Location:74 → 579
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_008457176.3 → XP_008455398.1  beta-amylase-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3C0E0, A0A1S3C0Z1
    Conserved Domains (1) summary
    cl07893
    Location:8 → 513
    AmyAc_family; Alpha amylase catalytic domain family

  3. XM_051084808.1 → XP_050940765.1  beta-amylase-like isoform X3

    UniProtKB/TrEMBL
    A0A5A7TFD9
Nucleotide Protein
Heading Accession and Version

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