U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103494813 rhamnogalacturonan I rhamnosyltransferase 1-like [ Cucumis melo (muskmelon) ]

Gene ID: 103494813, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103494813
Gene description
rhamnogalacturonan I rhamnosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103494813 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 12 NC_066868.1 (27580353..27583897, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546268.1 (920952..924439)

Chromosome 12 - NC_066868.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103495032 Neighboring gene transcription factor BIM1-like Neighboring gene dof zinc finger protein DOF2.2-like Neighboring gene protein MICROTUBULE BINDING PROTEIN 2C

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066868.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    27580353..27583897 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051080236.1 → XP_050936193.1  rhamnogalacturonan I rhamnosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3BYL3, A0A5D3BJR2

  2. XM_051080235.1 → XP_050936192.1  rhamnogalacturonan I rhamnosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3BYL3, A0A5D3BJR2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases