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MPG2 polygalacturonase-like [ Cucumis melo (muskmelon) ]

Gene ID: 103493318, updated on 23-Nov-2023

Summary

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Gene symbol
MPG2
Gene description
polygalacturonase-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See MPG2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (37447560..37451234)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546295.1 (1721273..1723244, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007547071.1 (1762..2349)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103493320 Neighboring gene prolycopene isomerase, chloroplastic Neighboring gene uncharacterized mitochondrial protein AtMg00860-like Neighboring gene ras-related protein RABA2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Polygalacturonase gene expression in ripe melon fruit supports a role for polygalacturonase in ripening-associated pectin disassembly. Hadfield KA, et al. Plant Physiol, 1998 Jun. PMID 9625689, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase-like
Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297531.1 → NP_001284460.1  polygalacturonase-like precursor

    See identical proteins and their annotated locations for NP_001284460.1

    Status: PROVISIONAL

    Source sequence(s)
    AF062466
    UniProtKB/TrEMBL
    A0A5A7V4D4, O81245
    Conserved Domains (2) summary
    pfam00295
    Location:79 → 399
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:30 → 416
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    37447560..37451234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases