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LOC103493026 beta-amylase 8 [ Cucumis melo (muskmelon) ]

Gene ID: 103493026, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103493026
Gene description
beta-amylase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103493026 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 7 NC_066863.1 (23489244..23496020)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546294.1 (2447727..2454490)

Chromosome 7 - NC_066863.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103493024 Neighboring gene uncharacterized LOC103493025 Neighboring gene uncharacterized LOC127150405 Neighboring gene microRNA MIR168 Neighboring gene NDR1/HIN1-like protein 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amylase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066863.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    23489244..23496020
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008453644.3 → XP_008451866.1  beta-amylase 8 isoform X2

    UniProtKB/TrEMBL
    A0A1S3BTA5, A0A5A7TB32
    Conserved Domains (1) summary
    cl38930
    Location:73 → 665
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_051087067.1 → XP_050943024.1  beta-amylase 8 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases