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LOC103492399 sucrose synthase [ Cucumis melo (muskmelon) ]

Gene ID: 103492399, updated on 10-Oct-2024

Summary

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Gene symbol
LOC103492399
Gene description
sucrose synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103492399 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 2 NC_066858.1 (2839905..2845206, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546292.1 (2776463..2781451, complement)

Chromosome 2 - NC_066858.1Genomic Context describing neighboring genes Neighboring gene putative pectinesterase 63 Neighboring gene probable flavin-containing monooxygenase 1 Neighboring gene eukaryotic translation initiation factor 3 subunit K Neighboring gene uncharacterized LOC103492401

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066858.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    2839905..2845206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051081387.1 → XP_050937344.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A1S3BR67, A0A5A7UN85

  2. XM_008452746.3 → XP_008450968.1  sucrose synthase

    See identical proteins and their annotated locations for XP_008450968.1

    UniProtKB/TrEMBL
    A0A1S3BR67, A0A5A7UN85, A0A9I9DAQ6
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase

  3. XM_008452747.3 → XP_008450969.1  sucrose synthase

    See identical proteins and their annotated locations for XP_008450969.1

    UniProtKB/TrEMBL
    A0A1S3BR67, A0A5A7UN85, A0A9I9DAQ6
    Conserved Domains (1) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase
Nucleotide Protein
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