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LOC103490630 pectinesterase/pectinesterase inhibitor PPE8B-like [ Cucumis melo (muskmelon) ]

Gene ID: 103490630, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103490630
Gene description
pectinesterase/pectinesterase inhibitor PPE8B-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103490630 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (27407408..27410192)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546288.1 (70035..72821)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion protein SCC4 Neighboring gene small nucleolar RNA U3 Neighboring gene histone acetyltransferase HAC1 Neighboring gene N-acylphosphatidylethanolamine synthase Neighboring gene kinesin-like protein KIN-14E Neighboring gene uncharacterized LOC127150070

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase/pectinesterase inhibitor PPE8B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    27407408..27410192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008450205.3 → XP_008448427.1  pectinesterase/pectinesterase inhibitor PPE8B-like

    UniProtKB/TrEMBL
    A0A1S3BKA0, A0A9I9D627
    Conserved Domains (3) summary
    PLN02201
    Location:80 → 573
    PLN02201; probable pectinesterase/pectinesterase inhibitor
    cd15799
    Location:83 → 236
    PMEI-like_4; plant invertase/pectin methylesterase inhibitor domain-containing protein
    pfam01095
    Location:262 → 559
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases