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LOC103485181 endochitinase-like [ Cucumis melo (muskmelon) ]

Gene ID: 103485181, updated on 10-Oct-2024

Summary

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Gene symbol
LOC103485181
Gene description
endochitinase-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Also known as
CHT-2; mcht-2
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Genomic context

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See LOC103485181 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (6440214..6441615, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546274.1 (6472742..6473991, complement)

Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103485177 Neighboring gene pentatricopeptide repeat-containing protein At2g17670 Neighboring gene uncharacterized LOC103485362 Neighboring gene chitinase 1-like Neighboring gene endochitinase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endochitinase-like
Names
endochitinase MCHT-2
family 19 chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001297544.1 → NP_001284473.1  endochitinase-like precursor

    See identical proteins and their annotated locations for NP_001284473.1

    Status: PROVISIONAL

    Source sequence(s)
    AB059275
    UniProtKB/TrEMBL
    A0A5A7SHJ5, A0A9I9CT31, Q9AVA8
    Conserved Domains (3) summary
    cd00325
    Location:77 → 305
    chitinase_glyco_hydro_19; Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some ...
    pfam00182
    Location:76 → 305
    Glyco_hydro_19; Chitinase class I
    pfam00187
    Location:22 → 59
    Chitin_bind_1; Chitin recognition protein

RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    6440214..6441615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051088176.1 → XP_050944133.1  endochitinase-like isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases