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LOC103484900 probable starch synthase 4, chloroplastic/amyloplastic [ Cucumis melo (muskmelon) ]

Gene ID: 103484900, updated on 6-Jun-2024

Summary

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Gene symbol
LOC103484900
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103484900 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (4631425..4643698, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546274.1 (4632200..4645237, complement)

Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH25-like Neighboring gene COMPASS-like H3K4 histone methylase component WDR5A Neighboring gene kinesin-like protein KIN-8B Neighboring gene uncharacterized LOC103484898 Neighboring gene phosphoenolpyruvate carboxykinase (ATP) 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    4631425..4643698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008442261.3 → XP_008440483.2  probable starch synthase 4, chloroplastic/amyloplastic isoform X6

    UniProtKB/TrEMBL
    A0A1S3B174

  2. XM_051088809.1 → XP_050944766.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X8

    UniProtKB/TrEMBL
    A0A1S3B174

  3. XM_008442260.3 → XP_008440482.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X5

    UniProtKB/TrEMBL
    A0A1S3B187, A0A1S3B1X9
    Conserved Domains (2) summary
    TIGR02095
    Location:203 → 632
    glgA; glycogen/starch synthase, ADP-glucose type
    cl10013
    Location:204 → 633
    Glycosyltransferase_GTB_type; Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate ...

  4. XM_008442253.3 → XP_008440475.2  probable starch synthase 4, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A1S3B1X9

  5. XM_008442255.3 → XP_008440477.2  probable starch synthase 4, chloroplastic/amyloplastic isoform X2

    UniProtKB/TrEMBL
    A0A1S3B183

  6. XM_008442256.3 → XP_008440478.2  probable starch synthase 4, chloroplastic/amyloplastic isoform X3

    UniProtKB/TrEMBL
    A0A1S3B169

  7. XM_051088807.1 → XP_050944764.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X4

    UniProtKB/TrEMBL
    A0A1S3B169

  8. XM_051088808.1 → XP_050944765.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X7

    UniProtKB/TrEMBL
    A0A5A7SYR9, A0A9I9CSB4

  9. XM_051088811.1 → XP_050944768.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X10

    UniProtKB/TrEMBL
    A0A9I9CSB4

  10. XM_051088810.1 → XP_050944767.1  probable starch synthase 4, chloroplastic/amyloplastic isoform X9

    UniProtKB/TrEMBL
    A0A1S3B174

RNA

  1. XR_007823129.1 RNA Sequence

  2. XR_007823128.1 RNA Sequence

Nucleotide Protein
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