U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103484611 probable beta-1,3-galactosyltransferase 2 [ Cucumis melo (muskmelon) ]

Gene ID: 103484611, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103484611
Gene description
probable beta-1,3-galactosyltransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC103484611 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 8 NC_066864.1 (2528072..2532316)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546274.1 (2520415..2524642)

Chromosome 8 - NC_066864.1Genomic Context describing neighboring genes Neighboring gene ATP synthase gamma chain, chloroplastic Neighboring gene uncharacterized LOC103484610 Neighboring gene autophagy-related protein 8C Neighboring gene uncharacterized LOC103484613 Neighboring gene arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066864.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    2528072..2532316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051088644.1 → XP_050944601.1  probable beta-1,3-galactosyltransferase 2 isoform X2

  2. XM_008441769.3 → XP_008439991.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_008439991.1

    UniProtKB/TrEMBL
    A0A1S3B022, A0A5D3CNB9, A0A9I9CRF6
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 403
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  3. XM_008441768.3 → XP_008439990.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_008439990.1

    UniProtKB/TrEMBL
    A0A1S3B022, A0A5D3CNB9, A0A9I9CRF6
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 403
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases