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LOC103484143 hevamine-A-like [ Cucumis melo (muskmelon) ]

Gene ID: 103484143, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103484143
Gene description
hevamine-A-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103484143 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (7991504..7993291, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546273.1 (7765880..7767801, complement)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107990406 Neighboring gene uncharacterized LOC103484217 Neighboring gene uncharacterized LOC103484146 Neighboring gene ABC transporter C family member 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hevamine-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    7991504..7993291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008441097.3 → XP_008439319.1  hevamine-A-like

    UniProtKB/TrEMBL
    A0A1S3AYH5, A0A5A7SX38, A0A5D3DH53
    Conserved Domains (1) summary
    cd02877
    Location:29 → 300
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
Nucleotide Protein
Heading Accession and Version

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