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LOC103483506 probable pectate lyase 8 [ Cucumis melo (muskmelon) ]

Gene ID: 103483506, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103483506
Gene description
probable pectate lyase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103483506 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (2889547..2894835)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546273.1 (2658812..2664084)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene probable voltage-gated potassium channel subunit beta Neighboring gene purple acid phosphatase 23 Neighboring gene inosine triphosphate pyrophosphatase Neighboring gene LRR receptor-like serine/threonine-protein kinase RGI1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    2889547..2894835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008440170.3 → XP_008438392.1  probable pectate lyase 8

    UniProtKB/TrEMBL
    A0A1S3AWX2, A0A5D3D285
    Conserved Domains (1) summary
    smart00656
    Location:173 → 367
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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