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LOC103483370 pectinesterase 2 [ Cucumis melo (muskmelon) ]

Gene ID: 103483370, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103483370
Gene description
pectinesterase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103483370 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (1974503..1979242)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546273.1 (1725716..1730432)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene probable pectinesterase/pectinesterase inhibitor 36 Neighboring gene chromo domain protein LHP1-like Neighboring gene tRNA threonylcarbamoyladenosine dehydratase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    1974503..1979242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008439971.2 → XP_008438193.1  pectinesterase 2

    UniProtKB/TrEMBL
    A0A1S3AVW4, A0A5A7U603, A0A5D3D1Y4
    Conserved Domains (2) summary
    smart00856
    Location:25 → 170
    PMEI; Plant invertase/pectin methylesterase inhibitor
    pfam01095
    Location:209 → 496
    Pectinesterase
Nucleotide Protein
Heading Accession and Version

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