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LOC103483294 digalactosyldiacylglycerol synthase 2, chloroplastic [ Cucumis melo (muskmelon) ]

Gene ID: 103483294, updated on 23-Nov-2023

Summary

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Gene symbol
LOC103483294
Gene description
digalactosyldiacylglycerol synthase 2, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis melo
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC103483294 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 6 NC_066862.1 (1500327..1504338, complement)
101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546273.1 (1252902..1256225, complement)

Chromosome 6 - NC_066862.1Genomic Context describing neighboring genes Neighboring gene putative threonine aspartase Neighboring gene LIM domain-containing protein PLIM2c-like Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA Z199

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_Cmelo_AY_1.0 Primary Assembly

Genomic

  1. NC_066862.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Range
    1500327..1504338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051085902.1 → XP_050941859.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    UniProtKB/TrEMBL
    A0A1S3AV60, A0A5D3D3K6

  2. XM_008439858.3 → XP_008438080.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_008438080.1

    UniProtKB/TrEMBL
    A0A1S3AV60, A0A5D3D3K6
    Conserved Domains (1) summary
    cl10013
    Location:1 → 462
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

  3. XM_008439857.3 → XP_008438079.1  digalactosyldiacylglycerol synthase 2, chloroplastic

    See identical proteins and their annotated locations for XP_008438079.1

    UniProtKB/TrEMBL
    A0A1S3AV60, A0A5D3D3K6
    Conserved Domains (1) summary
    cl10013
    Location:1 → 462
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
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