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c1d C1D nuclear receptor corepressor [ Poecilia reticulata (guppy) ]

Gene ID: 103476470, updated on 11-Mar-2024

Summary

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Gene symbol
c1d
Gene description
C1D nuclear receptor corepressor
See related
Ensembl:ENSPREG00000000742
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See c1d in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
5
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG15 NC_024345.1 (2500619..2502569, complement)

Linkage Group LG15 - NC_024345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103476476 Neighboring gene uncharacterized LOC103476475 Neighboring gene uncharacterized LOC103476471 Neighboring gene dynein axonemal assembly factor 10 Neighboring gene partner of NOB1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024345.1 Chromosome LG15 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear nucleic acid-binding protein C1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024345.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    2500619..2502569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008428857.2 → XP_008427079.1  nuclear nucleic acid-binding protein C1D

    See identical proteins and their annotated locations for XP_008427079.1

    UniProtKB/TrEMBL
    A0A3P9MUG7, A0A3P9MUH4
    Related
    ENSPREP00000000988.1, ENSPRET00000001027.1
    Conserved Domains (1) summary
    pfam04000
    Location:18 → 95
    Sas10_Utp3; Sas10/Utp3/C1D family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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