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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Poecilia reticulata (guppy) ]

Gene ID: 103476245, updated on 11-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSPREG00000013126
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
13
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG14 NC_024344.1 (21779104..22053300, complement)

Linkage Group LG14 - NC_024344.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC108166893 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024344.1 Chromosome LG14 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta
sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024344.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    21779104..22053300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008428447.2 → XP_008426669.1  delta-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_008426669.1

    UniProtKB/TrEMBL
    A0A3P9PCA5, A0A3P9PCK8
    Related
    ENSPREP00000019429.1, ENSPRET00000019639.1
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_017308640.1 → XP_017164129.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3P9PCA5, A0A3P9PCK8
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_008428449.2 → XP_008426671.1  delta-sarcoglycan isoform X2

    See identical proteins and their annotated locations for XP_008426671.1

    UniProtKB/TrEMBL
    A0A3P9PCA5, A0A3P9PCK8
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_008428446.2 → XP_008426668.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A3P9PCK8
    Related
    ENSPREP00000019495.1, ENSPRET00000019704.1
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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