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chrne cholinergic receptor, nicotinic, epsilon [ Poecilia reticulata (guppy) ]

Gene ID: 103475776, updated on 11-Mar-2024

Summary

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Gene symbol
chrne
Gene description
cholinergic receptor, nicotinic, epsilon
See related
Ensembl:ENSPREG00000022362
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See chrne in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
13
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG14 NC_024344.1 (9990718..10000454)

Linkage Group LG14 - NC_024344.1Genomic Context describing neighboring genes Neighboring gene neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adapter 1 Neighboring gene monoacylglycerol O-acyltransferase 3b Neighboring gene ATPase Na+/K+ transporting subunit beta 2b Neighboring gene glycolipid transfer protein domain containing 2b Neighboring gene phospholipase D2 Neighboring gene misshapen-like kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024344.1 Chromosome LG14 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit gamma-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024344.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    9990718..10000454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008427642.2 → XP_008425864.1  acetylcholine receptor subunit gamma-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9QH51
    Conserved Domains (3) summary
    TIGR00860
    Location:26 → 495
    LIC; Cation transporter family protein
    pfam02931
    Location:28 → 243
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:250 → 493
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region

  2. XM_008427643.2 → XP_008425865.1  acetylcholine receptor subunit gamma-like isoform X2

    UniProtKB/TrEMBL
    A0A3P9QH51
    Related
    ENSPREP00000033003.1, ENSPRET00000033380.1
    Conserved Domains (2) summary
    pfam02931
    Location:2 → 188
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
    pfam02932
    Location:195 → 438
    Neur_chan_memb; Neurotransmitter-gated ion-channel transmembrane region
Nucleotide Protein
Heading Accession and Version

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