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LOC103474404 heparan-sulfate 6-O-sulfotransferase 3-like [ Poecilia reticulata (guppy) ]

Gene ID: 103474404, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103474404
Gene description
heparan-sulfate 6-O-sulfotransferase 3-like
See related
Ensembl:ENSPREG00000013183
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103474404 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
2
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG2 NC_024332.1 (6222822..6252737)

Linkage Group LG2 - NC_024332.1Genomic Context describing neighboring genes Neighboring gene claudin 10e Neighboring gene DAZ interacting zinc finger protein 1 Neighboring gene claudin 10d Neighboring gene 2-oxoglutarate receptor 1 Neighboring gene uncharacterized LOC108166126 Neighboring gene kelch-like protein 41b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024332.1 Chromosome LG2 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024332.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    6222822..6252737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008425326.2 → XP_008423548.1  heparan-sulfate 6-O-sulfotransferase 3-like

    UniProtKB/TrEMBL
    A0A3P9PC43
    Related
    ENSPREP00000019481.1, ENSPRET00000019690.1
    Conserved Domains (1) summary
    pfam03567
    Location:89 → 355
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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