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b4galnt4a beta-1,4-N-acetyl-galactosaminyl transferase 4a [ Poecilia reticulata (guppy) ]

Gene ID: 103466150, updated on 11-Mar-2024

Summary

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Gene symbol
b4galnt4a
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 4a
See related
Ensembl:ENSPREG00000019698
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
b4galnt4
Orthologs
zebrafish all
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Genomic context

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See b4galnt4a in Genome Data Viewer
Location:
chromosome: LG6
Exon count:
20
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG6 NC_024336.1 (17100025..17257527, complement)

Linkage Group LG6 - NC_024336.1Genomic Context describing neighboring genes Neighboring gene BR serine/threonine kinase 2a Neighboring gene uncharacterized LOC108166371 Neighboring gene ankyrin repeat and BTB (POZ) domain containing 2b Neighboring gene transmembrane protein 86A Neighboring gene SPT2 chromatin protein domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024336.1 Chromosome LG6 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
Names
beta-1,4-N-acetyl-galactosaminyl transferase 4
beta-1,4-N-acetyl-galactosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024336.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    17100025..17257527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008411542.2 → XP_008409764.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A3P9Q4L3
    Related
    ENSPREP00000029111.1, ENSPRET00000029432.1
    Conserved Domains (3) summary
    COG0463
    Location:1076 → 1275
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cl08459
    Location:144 → 278
    PA14; PA14 domain
    cl11394
    Location:1073 → 1253
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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