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stau1 staufen double-stranded RNA binding protein 1 [ Poecilia reticulata (guppy) ]

Gene ID: 103464562, updated on 11-Mar-2024

Summary

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Gene symbol
stau1
Gene description
staufen double-stranded RNA binding protein 1
See related
Ensembl:ENSPREG00000003477
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See stau1 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
15
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG5 NC_024335.1 (4434198..4442939)

Linkage Group LG5 - NC_024335.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase Ia Neighboring gene protein polybromo-1-like Neighboring gene uncharacterized LOC103464561 Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene prostacyclin synthase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024335.1 Chromosome LG5 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
double-stranded RNA-binding protein Staufen homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024335.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    4434198..4442939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008408741.2 → XP_008406963.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X2

    Conserved Domains (3) summary
    smart00358
    Location:76 → 137
    DSRM; Double-stranded RNA binding motif
    cd00048
    Location:382 → 448
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam16482
    Location:543 → 653
    Staufen_C; Staufen C-terminal domain

  2. XM_008408740.2 → XP_008406962.1  double-stranded RNA-binding protein Staufen homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9N5T7
    Related
    ENSPREP00000004951.1, ENSPRET00000005017.1
    Conserved Domains (3) summary
    smart00358
    Location:76 → 137
    DSRM; Double-stranded RNA binding motif
    cd00048
    Location:383 → 449
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam16482
    Location:544 → 654
    Staufen_C; Staufen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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