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LOC103464540 interleukin enhancer-binding factor 3-like [ Poecilia reticulata (guppy) ]

Gene ID: 103464540, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103464540
Gene description
interleukin enhancer-binding factor 3-like
See related
Ensembl:ENSPREG00000000517
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103464540 in Genome Data Viewer
Location:
chromosome: LG1
Exon count:
20
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG1 NC_024331.1 (13945482..13958325, complement)

Linkage Group LG1 - NC_024331.1Genomic Context describing neighboring genes Neighboring gene synaptonemal complex central element protein 2 Neighboring gene acid phosphatase 5a, tartrate resistant Neighboring gene prostaglandin E receptor 1a (subtype EP1) Neighboring gene protein Wiz-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024331.1 Chromosome LG1 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interleukin enhancer-binding factor 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024331.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    13945482..13958325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017306200.1 → XP_017161689.1  interleukin enhancer-binding factor 3-like isoform X2

    UniProtKB/TrEMBL
    A0A3P9MTL9
    Conserved Domains (2) summary
    smart00358
    Location:453 → 514
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:131 → 387
    DZF; DZF domain

  2. XM_008408716.2 → XP_008406938.1  interleukin enhancer-binding factor 3-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9MTK7, A0A3P9MTL9
    Related
    ENSPREP00000000697.1, ENSPRET00000000727.1
    Conserved Domains (3) summary
    smart00358
    Location:567 → 613
    DSRM; Double-stranded RNA binding motif
    cd00048
    Location:461 → 522
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    cl02675
    Location:140 → 396
    DZF; DZF domain

  3. XM_008408732.2 → XP_008406954.1  interleukin enhancer-binding factor 3-like isoform X2

    See identical proteins and their annotated locations for XP_008406954.1

    UniProtKB/TrEMBL
    A0A3P9MTL9
    Conserved Domains (2) summary
    smart00358
    Location:453 → 514
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:131 → 387
    DZF; DZF domain

  4. XM_008408723.2 → XP_008406945.1  interleukin enhancer-binding factor 3-like isoform X2

    See identical proteins and their annotated locations for XP_008406945.1

    UniProtKB/TrEMBL
    A0A3P9MTL9
    Conserved Domains (2) summary
    smart00358
    Location:453 → 514
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:131 → 387
    DZF; DZF domain
Nucleotide Protein
Heading Accession and Version

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