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LOC103463578 torsin-1A-interacting protein 2-like [ Poecilia reticulata (guppy) ]

Gene ID: 103463578, updated on 9-Nov-2023

Summary

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Gene symbol
LOC103463578
Gene description
torsin-1A-interacting protein 2-like
See related
Ensembl:ENSPREG00000010820
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC103463578 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
6
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG4 NC_024334.1 (25003958..25007777)

Linkage Group LG4 - NC_024334.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103463580 Neighboring gene torsin-1A-interacting protein 1-like Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024334.1 Chromosome LG4 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024334.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    25003958..25007777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017304359.1 → XP_017159848.1  torsin-1A-interacting protein 2-like isoform X2

  2. XM_017304360.1 → XP_017159849.1  torsin-1A-interacting protein 2-like isoform X4

  3. XM_017304358.1 → XP_017159847.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9P2H9
    Related
    ENSPREP00000016025.1, ENSPRET00000016190.1

  4. XM_008407012.1 → XP_008405234.1  torsin-1A-interacting protein 2-like isoform X5

    Conserved Domains (1) summary
    pfam05609
    Location:119 → 333
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  5. XM_008407011.1 → XP_008405233.1  torsin-1A-interacting protein 2-like isoform X3

    Conserved Domains (1) summary
    pfam05609
    Location:146 → 360
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

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