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galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [ Poecilia reticulata (guppy) ]

Gene ID: 103462472, updated on 11-Mar-2024

Summary

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Gene symbol
galnt18b
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
See related
Ensembl:ENSPREG00000023127
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
galnt18
Orthologs
human zebrafish all
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Genomic context

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See galnt18b in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
12
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG3 NC_024333.1 (18192232..18291059, complement)

Linkage Group LG3 - NC_024333.1Genomic Context describing neighboring genes Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component Neighboring gene eukaryotic translation initiation factor 4, gamma 2a Neighboring gene BTB (POZ) domain containing 10b Neighboring gene Ras association domain family member 10b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024333.1 Chromosome LG3 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024333.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    18192232..18291059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008405288.2 → XP_008403510.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    UniProtKB/TrEMBL
    A0A3P9QJ18
    Related
    ENSPREP00000034142.1, ENSPRET00000034523.1
    Conserved Domains (4) summary
    cd02510
    Location:159 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:473 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 598
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:160 → 421
    Glyco_tranf_2_2; Glycosyltransferase like family 2

  2. XM_008405290.2 → XP_008403512.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

    See identical proteins and their annotated locations for XP_008403512.1

    Conserved Domains (4) summary
    cd02510
    Location:37 → 338
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:351 → 478
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:349 → 476
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:38 → 299
    Glyco_tranf_2_2; Glycosyltransferase like family 2
Nucleotide Protein
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