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galnt16 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16 [ Poecilia reticulata (guppy) ]

Gene ID: 103458217, updated on 11-Mar-2024

Summary

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Gene symbol
galnt16
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
See related
Ensembl:ENSPREG00000008407
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See galnt16 in Genome Data Viewer
Location:
chromosome: LG22
Exon count:
15
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG22 NC_024352.1 (5575934..5625879)

Linkage Group LG22 - NC_024352.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene VPS39 subunit of HOPS complex Neighboring gene uncharacterized LOC103458216 Neighboring gene NUMB endocytic adaptor protein Neighboring gene exonuclease 3'-5' domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024352.1 Chromosome LG22 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024352.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    5575934..5625879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008398867.2 → XP_008397089.1  polypeptide N-acetylgalactosaminyltransferase 16

    UniProtKB/TrEMBL
    A0A3P9NS32
    Related
    ENSPREP00000012384.1, ENSPRET00000012517.1
    Conserved Domains (4) summary
    cd02510
    Location:142 → 436
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:455 → 563
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:452 → 562
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:140 → 365
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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Gene LinkOut

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