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capn3b calpain 3b [ Poecilia reticulata (guppy) ]

Gene ID: 103457431, updated on 11-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: LG21
Exon count:
23
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG21 NC_024351.1 (10594755..10605216, complement)

Linkage Group LG21 - NC_024351.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 2b Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin-1-like Neighboring gene cysteine-rich venom protein TEL1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024351.1 Chromosome LG21 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024351.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    10594755..10605216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008397544.2 → XP_008395766.1  calpain-3-like isoform X1

    UniProtKB/TrEMBL
    A0A3P9NM01
    Conserved Domains (4) summary
    cd00051
    Location:643 → 697
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00648
    Location:78 → 372
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:386 → 536
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:540 → 578
    Calpain_u2; Unstructured region on Calpain-3

  2. XM_008397545.2 → XP_008395767.1  calpain-3-like isoform X2

    UniProtKB/TrEMBL
    A0A3P9NM01
    Conserved Domains (5) summary
    COG5126
    Location:659 → 747
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    pfam00648
    Location:78 → 372
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:386 → 536
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:540 → 578
    Calpain_u2; Unstructured region on Calpain-3
    cl08302
    Location:641 → 686
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

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