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LINC01442 long intergenic non-protein coding RNA 1442 [ Homo sapiens (human) ]

Gene ID: 103456507, updated on 12-Sep-2024

Summary

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Official Symbol
LINC01442provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1442provided by HGNC
Primary source
HGNC:HGNC:50764
See related
Ensembl:ENSG00000227510 AllianceGenome:HGNC:50764
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
13q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (60916755..60945955)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (60137189..60166390)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (61490889..61520089)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene RNY3 pseudogene 5 Neighboring gene RNY4 pseudogene 31 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:61455386-61456062 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:61662473-61663039 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:61668018-61668575 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:61720425-61720925 Neighboring gene uncharacterized LOC102723910 Neighboring gene microRNA 3169

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184201.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161612
    Related
    ENST00000662397.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    60916755..60945955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    60137189..60166390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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