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LOC103444588 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [ Malus domestica (apple) ]

Gene ID: 103444588, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103444588
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103444588 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 16 NC_041804.1 (1234455..1238717)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 10 NC_024248.1 (1382453..1386765, complement)

Chromosome 16 - NC_041804.1Genomic Context describing neighboring genes Neighboring gene vacuolar iron transporter 1-like Neighboring gene vacuolar iron transporter 1-like Neighboring gene heat shock transcription factor 1 Neighboring gene MACPF domain-containing protein At1g14780-like Neighboring gene probable S-adenosylmethionine-dependent methyltransferase At5g38100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041804.1 Reference ASM211411v1 Primary Assembly

    Range
    1234455..1238717
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008383542.3 → XP_008381764.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    See identical proteins and their annotated locations for XP_008381764.1

    UniProtKB/TrEMBL
    A0A498HMG6
    Conserved Domains (3) summary
    cd03788
    Location:55 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 848
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 829
    Trehalose_PPase; Trehalose-phosphatase

  2. XM_008383543.3 → XP_008381765.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6

    See identical proteins and their annotated locations for XP_008381765.1

    UniProtKB/TrEMBL
    A0A498HMG6
    Conserved Domains (3) summary
    cd03788
    Location:55 → 544
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 848
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:594 → 829
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
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