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LOC103440025 cellulose synthase-like protein D3 [ Malus domestica (apple) ]

Gene ID: 103440025, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103440025
Gene description
cellulose synthase-like protein D3
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103440025 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 7 NC_041795.1 (36501166..36506444, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 7 NC_024245.1 (26144559..26149689)

Chromosome 7 - NC_041795.1Genomic Context describing neighboring genes Neighboring gene 4-coumarate--CoA ligase 2 Neighboring gene transducin beta-like protein 3 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene TOM1-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041795.1 Reference ASM211411v1 Primary Assembly

    Range
    36501166..36506444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008378705.3 → XP_008376927.2  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A498JK35
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1140
    PLN02248; cellulose synthase-like protein

  2. XM_017333196.2 → XP_017188685.2  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A498JK35
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1140
    PLN02248; cellulose synthase-like protein

  3. XM_008378703.3 → XP_008376925.2  cellulose synthase-like protein D3

    UniProtKB/TrEMBL
    A0A498JK35
    Conserved Domains (1) summary
    PLN02248
    Location:1 → 1140
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
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