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LOC103439837 hydroxyproline O-galactosyltransferase HPGT1 [ Malus domestica (apple) ]

Gene ID: 103439837, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103439837
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103439837 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 7 NC_041795.1 (34679619..34683001)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 7 NC_024245.1 (24476872..24480297)

Chromosome 7 - NC_041795.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103439835 Neighboring gene uncharacterized LOC103439836 Neighboring gene ABC transporter C family member 10-like Neighboring gene uncharacterized LOC103439838 Neighboring gene uncharacterized LOC103440143 Neighboring gene probable inactive receptor kinase At4g23740

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1
Names
probable beta-1,3-galactosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041795.1 Reference ASM211411v1 Primary Assembly

    Range
    34679619..34683001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008378456.3 → XP_008376678.1  hydroxyproline O-galactosyltransferase HPGT1 isoform X1

    UniProtKB/TrEMBL
    A0A498JHJ0
    Conserved Domains (2) summary
    pfam13334
    Location:21 → 99
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:134 → 330
    Galactosyl_T; Galactosyltransferase

  2. XM_017333456.2 → XP_017188945.1  hydroxyproline O-galactosyltransferase HPGT1 isoform X2

    UniProtKB/TrEMBL
    A0A498JHJ0
Nucleotide Protein
Heading Accession and Version

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