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LOC103437228 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [ Malus domestica (apple) ]

Gene ID: 103437228, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103437228
Gene description
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103437228 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 5 NC_041793.1 (2940968..2945254, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 6 NC_024244.1 (11805519..11809788, complement)

Chromosome 5 - NC_041793.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103437225 Neighboring gene putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 Neighboring gene vacuolar protein sorting-associated protein 45 homolog Neighboring gene uncharacterized LOC103437232

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041793.1 Reference ASM211411v1 Primary Assembly

    Range
    2940968..2945254 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008375700.3 → XP_008373922.2  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X1

    Conserved Domains (1) summary
    cd02537
    Location:314 → 559
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_008375701.3 → XP_008373923.2  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:299 → 544
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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