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LOC103435689 probable galacturonosyltransferase 6 [ Malus domestica (apple) ]

Gene ID: 103435689, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103435689
Gene description
probable galacturonosyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103435689 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 5 NC_041793.1 (33544839..33548898)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 5 NC_024243.1 (14320805..14324763, complement)

Chromosome 5 - NC_041793.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin protein ligase DRIP2-like Neighboring gene magnesium transporter MRS2-I-like Neighboring gene photosystem II reaction center W protein, chloroplastic-like Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041793.1 Reference ASM211411v1 Primary Assembly

    Range
    33544839..33548898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029102684.1 → XP_028958517.1  probable galacturonosyltransferase 6 isoform X2

    Conserved Domains (1) summary
    PLN02718
    Location:1 → 616
    PLN02718; Probable galacturonosyltransferase

  2. XM_008374091.3 → XP_008372313.2  probable galacturonosyltransferase 6 isoform X1

    Conserved Domains (1) summary
    PLN02718
    Location:1 → 624
    PLN02718; Probable galacturonosyltransferase

  3. XM_008374092.3 → XP_008372314.2  probable galacturonosyltransferase 6 isoform X3

    Conserved Domains (1) summary
    PLN02718
    Location:7 → 518
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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