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LOC103435182 hydroxyproline O-galactosyltransferase GALT2-like [ Malus domestica (apple) ]

Gene ID: 103435182, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103435182
Gene description
hydroxyproline O-galactosyltransferase GALT2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103435182 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 5 NC_041793.1 (41405439..41410609, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 5 NC_024243.1 (7729990..7735154, complement)

Chromosome 5 - NC_041793.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103435204 Neighboring gene CSC1-like protein ERD4 Neighboring gene protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic-like Neighboring gene auxin response factor 6-like Neighboring gene uncharacterized LOC103435179

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041793.1 Reference ASM211411v1 Primary Assembly

    Range
    41405439..41410609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008373578.3 → XP_008371800.1  hydroxyproline O-galactosyltransferase GALT2-like

    UniProtKB/TrEMBL
    A0A498JUS4
    Conserved Domains (2) summary
    pfam00337
    Location:188 → 397
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:445 → 624
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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