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LOC103433160 probable beta-1,4-xylosyltransferase IRX10 [ Malus domestica (apple) ]

Gene ID: 103433160, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103433160
Gene description
probable beta-1,4-xylosyltransferase IRX10
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103433160 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 16 NC_041804.1 (10908865..10911720)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 4 NC_024242.1 (7147735..7150607, complement)

Chromosome 16 - NC_041804.1Genomic Context describing neighboring genes Neighboring gene sec14 cytosolic factor-like Neighboring gene uncharacterized LOC103433161 Neighboring gene transaldolase-like Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic Neighboring gene sterol 14-demethylase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041804.1 Reference ASM211411v1 Primary Assembly

    Range
    10908865..10911720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008371397.3 → XP_008369619.1  probable beta-1,4-xylosyltransferase IRX10

    Conserved Domains (1) summary
    pfam03016
    Location:46 → 341
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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