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LOC103432842 GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [ Malus domestica (apple) ]

Gene ID: 103432842, updated on 18-Sep-2024

Summary

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Gene symbol
LOC103432842
Gene description
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103432842 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 7 NC_041795.1 (30113870..30116654)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 4 NC_024242.1 (2504799..2507576)

Chromosome 7 - NC_041795.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 25 Neighboring gene clathrin heavy chain 2-like Neighboring gene uncharacterized LOC103432843 Neighboring gene uncharacterized LOC108173178 Neighboring gene transcription factor bHLH51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041795.1 Reference ASM211411v1 Primary Assembly

    Range
    30113870..30116654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029105941.1 → XP_028961774.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X2

    Conserved Domains (1) summary
    PLN02949
    Location:1 → 382
    PLN02949; transferase, transferring glycosyl groups

  2. XM_008371049.3 → XP_008369271.1  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X1

    Conserved Domains (2) summary
    cd03806
    Location:34 → 449
    GT1_ALG11_like; This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown ...
    PLN02949
    Location:1 → 459
    PLN02949; transferase, transferring glycosyl groups
Nucleotide Protein
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