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LOC103429037 granule-bound starch synthase 2, chloroplastic/amyloplastic-like [ Malus domestica (apple) ]

Gene ID: 103429037, updated on 18-Sep-2024

Summary

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Gene symbol
LOC103429037
Gene description
granule-bound starch synthase 2, chloroplastic/amyloplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103429037 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 9 NC_041797.1 (3472672..3477362)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 9 Unlocalized Scaffold (alt_haplotype3.MalDomGD1.0) NW_007546070.1 (3039291..3043946)

Chromosome 9 - NC_041797.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 6, chloroplastic Neighboring gene protein DMP8-like Neighboring gene uncharacterized LOC103429038 Neighboring gene E3 ubiquitin-protein ligase MPSR1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 2, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041797.1 Reference ASM211411v1 Primary Assembly

    Range
    3472672..3477362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008367179.3 → XP_008365401.1  granule-bound starch synthase 2, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A498J309
    Conserved Domains (2) summary
    cd03791
    Location:287 → 770
    GT1_Glycogen_synthase_DULL1_like; This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family ...
    TIGR02095
    Location:286 → 773
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein
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