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LOC103427878 probable starch synthase 4, chloroplastic/amyloplastic [ Malus domestica (apple) ]

Gene ID: 103427878, updated on 18-Sep-2024

Summary

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Gene symbol
LOC103427878
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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Genomic context

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See LOC103427878 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 5 NC_041793.1 (42283661..42290103, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 5 Unlocalized Scaffold (alt_haplotype3.MalDomGD1.0) NW_007545970.1 (3416497..3422898)

Chromosome 5 - NC_041793.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a-b binding protein of LHCII type 1-like Neighboring gene chlorophyll a-b binding protein of LHCII type 1-like Neighboring gene pentatricopeptide repeat-containing protein At3g14730 Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG14-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041793.1 Reference ASM211411v1 Primary Assembly

    Range
    42283661..42290103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008365963.3 → XP_008364185.2  probable starch synthase 4, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A498JU50
    Conserved Domains (1) summary
    PLN02939
    Location:40 → 1011
    PLN02939; transferase, transferring glycosyl groups
Nucleotide Protein
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