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LOC103417370 callose synthase 12-like [ Malus domestica (apple) ]

Gene ID: 103417370, updated on 22-Oct-2023

Summary

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Gene symbol
LOC103417370
Gene description
callose synthase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Malus domestica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
Also known as
cals4
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Genomic context

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See LOC103417370 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM211411v1 (GCF_002114115.1) 17 NC_041805.1 (28933758..28948691, complement)
101 previous assembly MalDomGD1.0 (GCF_000148765.1) 17 Unlocalized Scaffold (alt_haplotype1.MalDomGD1.0) NW_007545464.1 (1878027..1878602)

Chromosome 17 - NC_041805.1Genomic Context describing neighboring genes Neighboring gene probable ubiquitin-conjugating enzyme E2 25 Neighboring gene two pore calcium channel protein 1 Neighboring gene small nucleolar RNA J33 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene CASP-like protein 1C1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phloem cytochemical modification and gene expression following the recovery of apple plants from apple proliferation disease. Musetti R, et al. Phytopathology, 2010 Apr. PMID 20205543

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12-like
Names
1,3-beta-glucan synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM211411v1 Primary Assembly

Genomic

  1. NC_041805.1 Reference ASM211411v1 Primary Assembly

    Range
    28933758..28948691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029097250.1 → XP_028953083.1  callose synthase 12-like

    UniProtKB/TrEMBL
    A0A498HH67
    Conserved Domains (2) summary
    pfam02364
    Location:869 → 1633
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:153 → 266
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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